MHCXGraph.scripts.renumber_MHCII_imgt
=====================================

.. automodule:: MHCXGraph.scripts.renumber_MHCII_imgt
   :members:
   :undoc-members:
   :show-inheritance:






Functions
---------

.. autosummary::
   :toctree: .


   align_query_to_template

   choose_best_template_for_chain

   compute_alignment_stats

   continue_numbering_from_unmatched

   detect_mhcII_chains

   get_chain_polymer_residues

   get_chain_sequence_and_residues

   load_mhcii_templates

   load_structure

   main

   parse_imgt_label

   print_alignment_blocks

   print_debug_alignment

   process_structure_file_mhcii

   project_query_onto_gapped_template

   renumber_chain_from_projection

   residue_to_one_letter

   save_structure